What is the Best Shopify WMS?



What is the Best Shopify WMS?

Fast-growing Shopify stores fulfilling orders in-house inevitably come across the challenges of getting all their orders out with accuracy and on time. Finding the best Shopify WMS (warehouse management system) quickly becomes your only source of attention as the solution to your problem. As challenges extend beyond simply knowing how much inventory you have, you need a Shopify WMS. A warehouse management system helps you to organize all the operations within the walls of a warehouse. From placing purchase orders and providing a check-in system to the allocation of inventory throughout the warehouse and pick pack ship processes, everything is controlled by the WMS. The goal here is to help you understand what things a WMS can and cannot do, what to evaluate for your own system requirements, and what sorts of costs to expect.

What does a Shopify WMS do?

A Shopify WMS is your first source of truth for everything happening between your Shopify store and your inventory. Using a WMS with Shopify will help to sync up products and inventory, customers, orders, order status, and the custom fulfillment locations you are using with Shopify. This system will make all communication between your Shopify storefront, and other channels such as Amazon, Walmart, Etsy, and beyond. This is all happening on the store end, however, a Shopify WMS does a whole lot more.

Your warehouse management system is the primary tool to organize everything happening from the time purchase orders are placed to when an order leaves the warehouse. It will help you to place more accurate purchase orders with vendors, detect inbound product discrepancies, allocate items to bins, track locations within the warehouse, show accurate inventory, manage orders, assemble wave pick routes, integrate with conveyance and in-line scales or packaging equipment, shipping validation and rate selection among other things. Below is a full list of the things a Shopify WMS should do for you.

What should you expect of a Shopify WMS

  • Help place purchase orders based on moving average order volume and lead time from the vendor

  • Receive purchase orders and returns, detect differences in quantity ordered vs. delivered

  • Help to allocate inventory around to bin locations in the warehouse

  • Organize the warehouse storage locations, pick bins, staging areas, and other areas

  • Track replenishment and issue bin to bin replenishment within the warehouse

  • Issue and accept transfers from other warehouses (cross-docking)

  • Manage information on customers, products, bin locations, inventory quantities, orders, employees, vendors, packaging material, kits

  • Connect with your store channels through eCommerce sites (Shopify, WooCommerce, Big Commerce etc.) or EDI

  • Batch orders for efficient pick pack

  • Assemble pick routes and track inventory picked

  • Handoff picked orders to packaging stations with detail on package sizes, order details

  • Provide shipping validation and purchase labels autonomously

  • Connect with conveyance and in-line shipping hardware

  • Provide barcodes and printing services

  • Manage employee efforts and productivity

  • Directed and undirected work to employees

Criteria for the Best Shopify WMS

It's true that not all warehouse systems are created the same. There are lots of variable factors that go into creating the 'best' Shopify WMS. That said, here are some factors to take into consideration to find a WMS that works with your Shopify store. One of these key elements is how complicated the product is that you will need the WMS to hold information for. Your products determine to a degree what kind of WMS you will need. If you have products that are large and bulky, hazardous or require special storage instructions you may need the extra capability. If you have products that are going to come in with different units of measure or are kitted ahead of time, you may require a WMS with enhanced functionality. A Shopify WMS should be able to cover 95% of the use cases you have, and likely 100% when you adjust your own processes to match those to the capability of the WMS you have selected. Of course, another large factor here is whether or not the WMS integrates with Shopify in the first place, and if it does, is the Shopify WMS updating tracking, inventory, customers, shipping options, variations, and beyond? It is our experience that even though one system can connect with Shopify, this does not mean they have a proper connection with Shopify to enable you to handle and update all the information necessary.

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Shopify WMS Criteria

Shopify Connection

  • Uses webhooks for updating information between WMS and Shopify

  • Dual way sync between customers, orders, products, inventory, and custom fulfillment

  • Can connect to multiple stores


  • Purchasing and inbound

  • Units of measurement

  • Pick bin replenishment

  • Batch fulfillment

  • Wave picking

  • Inventory control

  • Barcode scanning on mobile

  • Mobile printing

Cost and Implementation

  • Less than 3-months

  • Scale as your business scales

  • Per-user, per month, or done by order volume and number of SKUs

  • SaaS, on-premise, or hybrid

  • Initial setup fee or done in-house

korber tier 1 shopify wms

Tier 1 Shopify WMS: Korber (Highjump)

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A tier 1 Shopify WMS is one of the market leaders, with broad exposure to a variety of industries, and with an extensive feature set. These are also the longest to implement and by far the most expensive. These systems may have lots more feature capability than many other systems though these advanced features oftentimes come as an additional module that you'll have to add to the core system. Our pick for the tier 1 Shopify WMS comes from our own experience of clients who have used these systems, as well as from looking through online reviews from certified clients. Our pick here is Korber since they are a premier tier 1 WMS, that we have worked with in the past, and know many of their customers. Korber is the parent company behind Highjump which was acquired a few years ago. They have a high quality system with all the essentials for managing the entire supply chain. Though they may be one of the lesser known 'tier 1' systems, they offer a very capable system.



  • Flexible to adapt to various warehouse designs and operating procedures

  • Covers the entire supply chain

  • Easy to develop on top of

  • Considerable customization options out of the box

  • Less expensive than some other tier 1 systems


  • Updating technology infrastructure can be a major burden

  • Implementation time can be longer than expected (up to 18-24 months)

  • Requires a large workforce to utilize properly

  • Support is challenging to receive

  • Some integrations are clunky

skusavvy shopify wms

Tier 2 Shopify WMS: SKUSavvy

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Our pick for a top-notch Shopify WMS should come as no surprise, SKUSavvy. We may be a little biased here, however, the underlying traits that make this system the pick for tier 2 come directly from the companies we enlisted to make it. That's right, we made SKUSavvy not on a whim but with intention and input from the companies that are doing millions of dollars annually on Shopify. We made SKUSavvy to have the competitive feature set required to meet the needs of 80% of the Shopify sellers out there. It is designed to be simple to use comparatively with many of our WMS competitors and to operate at a fraction of the cost. Within SKUSavvy you will find all the essentials for Shopify sellers to operate a high functioning warehouse network with clear visibility into inventory and replenishment. It was built to have all the essential integrations to make your Shopify store fulfillment processes a success. While SKUSavvy may not have all the bells and whistles of a tier 1 system, you will find many of the same core features along with our own unique and powerful twist with visual warehousing accessible on any mobile device. One unique advantage is that SKUSavvy was built for mobile use cases to help you move faster into the modern digital age. Oh yeah, you get one account for free :-)



  • Free account included

  • Strong Shopify connection with webhooks

  • 80% or more of tier 1 capability

  • Value-based pricing that scales

  • Open API enables easy customization or integrations

  • Modern mobile infrastructure

  • First of its kind visual warehouse management system

  • Quick to setup


  • Not as extensive of a feature set as tier 1 WMS

  • Can be overwhelming to set up if using self-service SaaS

  • Less ERP integrations

  • Can't customize like tier 1 WMS without custom service contract

Stocky tier 3 shopify WMS

Tier 3 Shopify WMS: SKULabs

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As a basic Shopify WMS this platform offers a good bit of functionality for simplifying your order management and inventory. SKUlabs is a system that has fewer capabilities from a warehouse perspective, and instead offers a more streamlined platform for simple Shopify stores. If you have a warehouse and need granularity on the warehouse level, you'd be best off to go for a system that will have more warehouse capabilities such as bin management, replenishment, and cross-docking, among other things. For a very simple operation without complicated products or order management considerations this will be a suitable option.



  • Simple system without many major features

  • Integrates with many eCommerce platforms

  • Cloud-based

  • Barcode scanning and printing


  • Expensive for an entry-level system

  • Limited automation of warehouse tasks

  • Missing all ERP connections

  • Not mobile based

  • Manual entry and operations flow

  • Missing core warehouse capability

There you have it, our picks for the best Shopify WMS out there. Keep in mind each WMS has unique advantages and disadvantages and while we've tried to capture some of our favorites, it's up to you to consider what will work in your own unique situation.

If you are considering a new WMS, reach out to us so we can identify if your business is a good fit for SKUSavvy. If not, we'll help to consult with you to figure out the right solution for your business since we have many partners in the space.

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